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Conduct molecular mechanism research on environmental chemistry issues with computational simulation and structure-activity relationships as the core. Dedicated to developing computational toxicology and quantitative structure-activity methods for mechanism oriented exploration of POPs environmental behavior and biological effects, revealing the molecular structure basis that determines their toxic forms and toxic effects, interpreting the micro chemical mechanisms of effects, and conducting basic research on the application of experimental evidence data mining and computational models in toxic chemical risk assessment.
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Molecular docking is one of the important methods of molecular simulation, which is essentially a recognition process between two or more molecules, and the process involves spatial matching and energy matching between molecules. The molecular docking method has a wide range of applications in the fields of drug design, material design and so on.
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Density functional theory is a computational quantum mechanical modelling method used in physics, chemistry and materials science to investigate the electronic structure (or nuclear structure) (principally the ground state) of many-body systems, in particular atoms, molecules, and the condensed phases. Using this theory, the properties of a many-electron system can be determined by using functionals, i.e. functions of another function. In the case of DFT, these are functionals of the spatially dependent electron density.
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Molecular dynamics is a computer simulation method for analyzing the physical movements of atoms and molecules. The atoms and molecules are allowed to interact for a fixed period of time, giving a view of the dynamic "evolution" of the system. In the most common version, the trajectories of atoms and molecules are determined by numerically solving Newton's equations of motion for a system of interacting particles, where forces between the particles and their potential energies are often calculated using interatomic potentials or molecular mechanical force fields.
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Machine Learning & Deep Learning are branches of artificial intelligence that enable computers to learn from data and make decisions or predictions without explicit programming. Machine Learning focuses on algorithms and statistical models to perform specific tasks, while Deep Learning, a subset of Machine Learning, employs neural networks with multiple layers to learn complex patterns from large datasets.
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The combination of experimental and computational methods complements each other.
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We make the models and methods we develop available to the public as web pages or programs, which is a great convenience for non-specialists.